Keep in mind that flags for duplicated answers are raised when the answer is first posted, probably after the grace period. When the answer is edited, the flag is not automatically dismissed in the same way it happens with other flags.
For example, there is a flag for duplicated answer on this answer, which is said to be a duplicate of this answer, which now appears different, but it was really a duplicate when first posted.
The reason why those flags are not automatically dismissed is evident with those answers: While the answer was edited, its meaning doesn't change; only a human being can tell if the duplicated answer means a duplicated question, or if there are other actions that need to be taken.